IL_4V6F_196

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_196 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1647

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V6F|1|CA|G|409
4V6F|1|CA|G|410
4V6F|1|CA|A|411
4V6F|1|CA|A|412
4V6F|1|CA|G|413
4V6F|1|CA|A|414
4V6F|1|CA|A|415
4V6F|1|CA|G|416
*
4V6F|1|CA|U|427
4V6F|1|CA|G|428
4V6F|1|CA|U|429
4V6F|1|CA|A|430
4V6F|1|CA|A|431
4V6F|1|CA|A|432
4V6F|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S4