IL_4V6F_212

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_212 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0813

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6F|1|CA|C|779
4V6F|1|CA|A|780
4V6F|1|CA|A|781
4V6F|1|CA|A|782
4V6F|1|CA|C|783
*
4V6F|1|CA|G|799
4V6F|1|CA|G|800
4V6F|1|CA|U|801
4V6F|1|CA|A|802
4V6F|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA