IL_4V6F_221

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4V6F|1|CA|G|1053, 4V6F|1|CA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_221 not in the Motif Atlas

Geometric match to IL_1FUF_003

Geometric discrepancy: 0.1882

The information below is about IL_1FUF_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V6F|1|CA|U|1052
4V6F|1|CA|G|1053
4V6F|1|CA|C|1054
4V6F|1|CA|A|1055
*
4V6F|1|CA|U|1205
4V6F|1|CA|G|1206

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CB

Transfer RNA; tRNA

Chain CF

30S ribosomal protein S3

Chain CM

30S ribosomal protein S10

Chain CQ

30S ribosomal protein S14 type Z