IL_4V6F_260

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6F|1|DA|G|801, 4V6F|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_260 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1012

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V6F|1|DA|G|674
4V6F|1|DA|A|675
4V6F|1|DA|A|676
4V6F|1|DA|A|677
4V6F|1|DA|C|678
*
4V6F|1|DA|G|799
4V6F|1|DA|A|800
4V6F|1|DA|G|801
4V6F|1|DA|A|802
4V6F|1|DA|U|803
4V6F|1|DA|A|804
4V6F|1|DA|G|805
4V6F|1|DA|C|806

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DO

50S RIBOSOMAL PROTEIN L15