3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGUG*CUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6F_264 not in the Motif Atlas
Homologous match to IL_7RQB_022
Geometric discrepancy: 0.0745
The information below is about IL_7RQB_022
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_05564.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
14

Unit IDs

4V6F|1|DA|G|738
4V6F|1|DA|G|739
4V6F|1|DA|U|740
4V6F|1|DA|G|741
*
4V6F|1|DA|C|756
4V6F|1|DA|U|757
4V6F|1|DA|C|758

Current chains

Chain DA
23S RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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