IL_4V6F_272

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_272 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3521

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6F|1|DA|G|875
4V6F|1|DA|C|876
4V6F|1|DA|U|877
4V6F|1|DA|A|878
4V6F|1|DA|G|879
*
4V6F|1|DA|C|898
4V6F|1|DA|A|899
4V6F|1|DA|A|900
4V6F|1|DA|A|901
4V6F|1|DA|C|902

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain DP

50S RIBOSOMAL PROTEIN L16

Chain DV

50S RIBOSOMAL PROTEIN L25