IL_4V6F_334

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_334 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1387

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V6F|1|DA|U|2457
4V6F|1|DA|G|2458
4V6F|1|DA|A|2459
*
4V6F|1|DA|U|2493
4V6F|1|DA|G|2494

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain D3

50S RIBOSOMAL PROTEIN L27

Chain DP

50S RIBOSOMAL PROTEIN L16