IL_4V6F_337

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_337 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.1047

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6F|1|DA|C|2507
4V6F|1|DA|G|2508
*
4V6F|1|DA|U|2580
4V6F|1|DA|G|2581
4V6F|1|DA|G|2582

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DE

50S RIBOSOMAL PROTEIN L3