IL_4V6G_017

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V6G|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1474

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V6G|1|AA|G|409
4V6G|1|AA|G|410
4V6G|1|AA|A|411
4V6G|1|AA|A|412
4V6G|1|AA|G|413
4V6G|1|AA|A|414
4V6G|1|AA|A|415
4V6G|1|AA|G|416
*
4V6G|1|AA|U|427
4V6G|1|AA|G|428
4V6G|1|AA|U|429
4V6G|1|AA|A|430
4V6G|1|AA|A|431
4V6G|1|AA|A|432
4V6G|1|AA|C|433

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S4