IL_4V6G_041

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4V6G|1|AA|G|1053, 4V6G|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_041 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.1878

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V6G|1|AA|U|1052
4V6G|1|AA|G|1053
4V6G|1|AA|C|1054
4V6G|1|AA|A|1055
*
4V6G|1|AA|U|1205
4V6G|1|AA|G|1206

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain A1

MRNA

Chain AF

30S RIBOSOMAL PROTEIN S3

Chain AM

30S RIBOSOMAL PROTEIN S10

Chain AQ

30S RIBOSOMAL PROTEIN S14