IL_4V6G_055

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_055 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2759

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V6G|1|AA|C|1407
4V6G|1|AA|A|1408
4V6G|1|AA|C|1409
*
4V6G|1|AA|G|1491
4V6G|1|AA|A|1492
4V6G|1|AA|A|1493
4V6G|1|AA|G|1494

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain A1

MRNA

Chain AO

30S RIBOSOMAL PROTEIN S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA