IL_4V6G_079

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6G|1|BA|G|801, 4V6G|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_079 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0943

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V6G|1|BA|G|674
4V6G|1|BA|A|675
4V6G|1|BA|A|676
4V6G|1|BA|A|677
4V6G|1|BA|C|678
*
4V6G|1|BA|G|799
4V6G|1|BA|A|800
4V6G|1|BA|G|801
4V6G|1|BA|A|802
4V6G|1|BA|U|803
4V6G|1|BA|A|804
4V6G|1|BA|G|805
4V6G|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15