IL_4V6G_199

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_199 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.0927

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V6G|1|CA|G|654
4V6G|1|CA|A|655
*
4V6G|1|CA|U|751
4V6G|1|CA|G|752
4V6G|1|CA|A|753
4V6G|1|CA|C|754

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S8

Chain CR

30S RIBOSOMAL PROTEIN S15