IL_4V6G_230

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_230 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.109

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6G|1|CA|C|1431
4V6G|1|CA|G|1432
4V6G|1|CA|A|1433
4V6G|1|CA|A|1434
4V6G|1|CA|G|1435
*
4V6G|1|CA|C|1466
4V6G|1|CA|G|1467
4V6G|1|CA|A|1468
4V6G|1|CA|G|1469

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DR

50S ribosomal protein L19