IL_4V7K_008

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

4V7K|1|AA|U|271|||N

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_008 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.3266

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V7K|1|AA|G|271|||I
4V7K|1|AA|C|271|||J
*
4V7K|1|AA|G|271|||M
4V7K|1|AA|U|271|||N
4V7K|1|AA|C|271|||O

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AI

50S ribosomal protein L9