IL_4V7K_019

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V7K|1|AA|G|801, 4V7K|1|AA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_019 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0643

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7K|1|AA|G|674
4V7K|1|AA|A|675
4V7K|1|AA|A|676
4V7K|1|AA|A|677
4V7K|1|AA|C|678
*
4V7K|1|AA|G|799
4V7K|1|AA|A|800
4V7K|1|AA|G|801
4V7K|1|AA|A|802
4V7K|1|AA|U|803
4V7K|1|AA|A|804
4V7K|1|AA|G|805
4V7K|1|AA|C|806

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AP

50S ribosomal protein L15