IL_4V7K_064

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_064 not in the Motif Atlas

Geometric match to IL_5J7L_306

Geometric discrepancy: 0.083

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V7K|1|AA|G|1666
4V7K|1|AA|G|1667
4V7K|1|AA|A|1668
4V7K|1|AA|A|1669
*
4V7K|1|AA|U|1993
4V7K|1|AA|C|1994

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L14