IL_4V7K_103

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_103 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2429

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7K|1|AA|U|2684
4V7K|1|AA|G|2685
4V7K|1|AA|G|2686
*
4V7K|1|AA|C|2723
4V7K|1|AA|C|2724
4V7K|1|AA|A|2725

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L14

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19