3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CU*AUAAG
Length
7 nucleotides
Bulged bases
4V7K|1|AA|A|2713
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_105 not in the Motif Atlas
Homologous match to IL_7RQB_106
Geometric discrepancy: 0.0774
The information below is about IL_7RQB_106
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_71530.2
Basepair signature
cWW-cWW
Number of instances in this motif group
16

Unit IDs

4V7K|1|AA|C|2695
4V7K|1|AA|U|2696
*
4V7K|1|AA|A|2711
4V7K|1|AA|U|2712
4V7K|1|AA|A|2712|||A
4V7K|1|AA|A|2713
4V7K|1|AA|G|2714

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain AR
50S ribosomal protein L17
Chain AT
50S ribosomal protein L19

Coloring options:


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