IL_4V7K_175

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_175 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.0943

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7K|1|Aa|C|1412
4V7K|1|Aa|A|1413
4V7K|1|Aa|U|1414
*
4V7K|1|Aa|G|1486
4V7K|1|Aa|G|1487
4V7K|1|Aa|G|1488

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Al

30S ribosomal protein S12