IL_4V7K_274

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_274 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.105

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V7K|1|BA|A|2459
4V7K|1|BA|U|2460
4V7K|1|BA|C|2461
*
4V7K|1|BA|G|2489
4V7K|1|BA|G|2490
4V7K|1|BA|U|2491
4V7K|1|BA|U|2492
4V7K|1|BA|U|2493

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16