3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGGCCAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_319 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.132
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

4V7K|1|Ba|C|504
4V7K|1|Ba|G|505
4V7K|1|Ba|G|506
4V7K|1|Ba|C|507
4V7K|1|Ba|C|508
4V7K|1|Ba|A|509
4V7K|1|Ba|A|510
4V7K|1|Ba|C|511
*
4V7K|1|Ba|G|540
4V7K|1|Ba|G|541

Current chains

Chain Ba
RNA (1504-MER)

Nearby chains

Chain Bd
30S ribosomal protein S4
Chain Bl
30S ribosomal protein S12

Coloring options:


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