IL_4V7K_346

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_346 not in the Motif Atlas

Geometric match to IL_4P43_001

Geometric discrepancy: 0.1175

The information below is about IL_4P43_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7K|1|Ba|G|1061
4V7K|1|Ba|U|1062
4V7K|1|Ba|C|1063
*
4V7K|1|Ba|G|1193
4V7K|1|Ba|U|1194
4V7K|1|Ba|C|1195

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bc

30S ribosomal protein S3

Chain Be

30S ribosomal protein S5

Chain Bi

30S ribosomal protein S9

Chain Bj

30S ribosomal protein S10

Chain Bn

30S ribosomal protein S14 type Z

Chain By

Toxin relE