IL_4V7K_390

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGCGUAGGAUAGGUG*CACCCUG

Length

23 nucleotides

Bulged bases

4V7K|1|BA|G|2116, 4V7K|1|BA|A|2117, 4V7K|1|BA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7K|1|BA|C|2108
4V7K|1|BA|U|2109
4V7K|1|BA|G|2110
4V7K|1|BA|C|2111
4V7K|1|BA|G|2112
4V7K|1|BA|U|2113
4V7K|1|BA|A|2114
4V7K|1|BA|G|2115
4V7K|1|BA|G|2116
4V7K|1|BA|A|2117
4V7K|1|BA|U|2118
4V7K|1|BA|A|2119
4V7K|1|BA|G|2120
4V7K|1|BA|G|2121
4V7K|1|BA|U|2122
4V7K|1|BA|G|2123
*
4V7K|1|BA|C|2175
4V7K|1|BA|A|2176
4V7K|1|BA|C|2177
4V7K|1|BA|C|2178
4V7K|1|BA|C|2179
4V7K|1|BA|U|2180
4V7K|1|BA|G|2181

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L1

Chain Bw

Transfer RNA; tRNA