IL_4V7K_394

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

4V7K|1|Ba|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_394 not in the Motif Atlas

Geometric match to IL_8C3A_008

Geometric discrepancy: 0.2567

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7K|1|Ba|C|43
4V7K|1|Ba|G|44
4V7K|1|Ba|U|45
*
4V7K|1|Ba|G|396
4V7K|1|Ba|A|397
4V7K|1|Ba|C|398
4V7K|1|Ba|G|399

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bd

30S ribosomal protein S4

Chain Bp

30S ribosomal protein S16