IL_4V7L_017

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_017 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.2239

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7L|1|AA|G|255
4V7L|1|AA|U|256
4V7L|1|AA|G|257
*
4V7L|1|AA|C|269
4V7L|1|AA|A|270
4V7L|1|AA|C|271

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA