3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGUAG*CGAAGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_104 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1197
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4V7L|1|BA|C|857
4V7L|1|BA|U|858
4V7L|1|BA|G|859
4V7L|1|BA|U|860
4V7L|1|BA|A|861
4V7L|1|BA|G|862
*
4V7L|1|BA|C|915
4V7L|1|BA|G|916
4V7L|1|BA|A|917
4V7L|1|BA|A|918
4V7L|1|BA|G|919
4V7L|1|BA|G|920

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L27
Chain B3
50S ribosomal protein L30
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BQ
50S ribosomal protein L16

Coloring options:


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