IL_4V7L_109

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

4V7L|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_109 not in the Motif Atlas

Geometric match to IL_9DFE_044

Geometric discrepancy: 0.3899

The information below is about IL_9DFE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V7L|1|BA|G|879
4V7L|1|BA|G|880
4V7L|1|BA|G|881
*
4V7L|1|BA|U|895
4V7L|1|BA|A|896
4V7L|1|BA|C|897
4V7L|1|BA|C|898

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BZ

50S ribosomal protein L25