IL_4V7L_233

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V7L|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_233 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1768

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V7L|1|CA|G|683
4V7L|1|CA|A|684
4V7L|1|CA|G|685
4V7L|1|CA|U|686
4V7L|1|CA|A|687
4V7L|1|CA|G|688
*
4V7L|1|CA|C|699
4V7L|1|CA|G|700
4V7L|1|CA|C|701
4V7L|1|CA|A|702
4V7L|1|CA|G|703
4V7L|1|CA|A|704
4V7L|1|CA|U|705
4V7L|1|CA|A|706
4V7L|1|CA|C|707

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA