3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCC*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_252 not in the Motif Atlas
Geometric match to IL_3D0M_002
Geometric discrepancy: 0.2045
The information below is about IL_3D0M_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.2
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4V7L|1|CA|G|1241
4V7L|1|CA|C|1242
4V7L|1|CA|C|1243
*
4V7L|1|CA|G|1294
4V7L|1|CA|G|1295
4V7L|1|CA|C|1296

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CG
30S ribosomal protein S7
Chain CM
30S ribosomal protein S13
Chain CU
30S ribosomal protein Thx

Coloring options:


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