IL_4V7L_306
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AGG,CCU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7L_306 not in the Motif Atlas
- Geometric match to IL_4V9F_023
- Geometric discrepancy: 0.1971
- The information below is about IL_4V9F_023
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V7L|1|DA|A|872
4V7L|1|DA|G|873
4V7L|1|DA|G|874
*
4V7L|1|DA|C|903
4V7L|1|DA|C|904
4V7L|1|DA|U|905
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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