IL_4V7L_361

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_361 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.2154

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7L|1|DA|C|2064
4V7L|1|DA|C|2065
4V7L|1|DA|C|2066
*
4V7L|1|DA|G|2444
4V7L|1|DA|G|2445
4V7L|1|DA|G|2446

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain DF

50S ribosomal protein L4