IL_4V7L_375

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_375 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.1741

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V7L|1|DA|C|2350
4V7L|1|DA|G|2351
4V7L|1|DA|A|2352
4V7L|1|DA|G|2353
*
4V7L|1|DA|C|2364
4V7L|1|DA|G|2365
4V7L|1|DA|A|2366
4V7L|1|DA|G|2367

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35