IL_4V7L_376
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUCC*GGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7L_376 not in the Motif Atlas
- Geometric match to IL_1U6B_001
- Geometric discrepancy: 0.2981
- The information below is about IL_1U6B_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
4V7L|1|DA|G|2400
4V7L|1|DA|U|2401
4V7L|1|DA|C|2402
4V7L|1|DA|C|2403
*
4V7L|1|DA|G|2414
4V7L|1|DA|G|2415
4V7L|1|DA|C|2416
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L28
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DP
- 50S ribosomal protein L15
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