3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCG*CGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_384 not in the Motif Atlas
Geometric match to IL_406D_002
Geometric discrepancy: 0.2498
The information below is about IL_406D_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4V7L|1|DA|U|2514
4V7L|1|DA|C|2515
4V7L|1|DA|G|2516
*
4V7L|1|DA|C|2568
4V7L|1|DA|G|2569
4V7L|1|DA|G|2570

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DE
50S ribosomal protein L3
Chain DN
50S ribosomal protein L13

Coloring options:


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