IL_4V7L_430

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_430 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1692

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7L|1|CA|G|450
4V7L|1|CA|A|451
4V7L|1|CA|A|452
4V7L|1|CA|A|453
4V7L|1|CA|C|454
4V7L|1|CA|C|455
4V7L|1|CA|C|456
*
4V7L|1|CA|G|475
4V7L|1|CA|G|476
4V7L|1|CA|A|477
4V7L|1|CA|C|479
4V7L|1|CA|U|480
4V7L|1|CA|G|481
4V7L|1|CA|A|482
4V7L|1|CA|C|483

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16