IL_4V7L_432

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGC*GCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_432 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2305

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V7L|1|CA|G|593
4V7L|1|CA|G|594
4V7L|1|CA|G|595
4V7L|1|CA|C|596
*
4V7L|1|CA|G|644
4V7L|1|CA|C|645
4V7L|1|CA|U|646

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17