3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGUC*GAUACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_433 not in the Motif Atlas
Geometric match to IL_8P9A_467
Geometric discrepancy: 0.3925
The information below is about IL_8P9A_467
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07469.2
Basepair signature
cWW-tSH-cWW-cSH-R-cWW
Number of instances in this motif group
3

Unit IDs

4V7L|1|CA|C|596
4V7L|1|CA|G|597
4V7L|1|CA|U|598
4V7L|1|CA|C|599
*
4V7L|1|CA|G|639
4V7L|1|CA|A|640
4V7L|1|CA|U|641
4V7L|1|CA|A|642
4V7L|1|CA|C|643
4V7L|1|CA|G|644

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CH
30S ribosomal protein S8
Chain CQ
30S ribosomal protein S17

Coloring options:


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