IL_4V7L_436

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAACC*GGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_436 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2937

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7L|1|CA|C|779
4V7L|1|CA|A|780
4V7L|1|CA|A|781
4V7L|1|CA|A|782
4V7L|1|CA|C|783
4V7L|1|CA|C|784
*
4V7L|1|CA|G|798
4V7L|1|CA|G|799
4V7L|1|CA|G|800
4V7L|1|CA|U|801
4V7L|1|CA|A|802
4V7L|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA