IL_4V7L_441

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUGC*GCCC

Length

9 nucleotides

Bulged bases

4V7L|1|CA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_441 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2931

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V7L|1|CA|G|1047
4V7L|1|CA|G|1048
4V7L|1|CA|U|1049
4V7L|1|CA|G|1050
4V7L|1|CA|C|1051
*
4V7L|1|CA|G|1207
4V7L|1|CA|C|1208
4V7L|1|CA|C|1209
4V7L|1|CA|C|1210

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CN

30S ribosomal protein S14