IL_4V7L_449
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAG*CUCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7L_449 not in the Motif Atlas
- Geometric match to IL_3PDR_004
- Geometric discrepancy: 0.3894
- The information below is about IL_3PDR_004
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
4V7L|1|DA|G|862
4V7L|1|DA|A|863
4V7L|1|DA|G|864
*
4V7L|1|DA|C|912
4V7L|1|DA|U|913
4V7L|1|DA|C|914
4V7L|1|DA|C|915
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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