IL_4V7P_009

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_009 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.1216

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V7P|1|AA|C|132
4V7P|1|AA|U|133
4V7P|1|AA|A|134
4V7P|1|AA|C|135
4V7P|1|AA|C|136
*
4V7P|1|AA|G|227
4V7P|1|AA|A|228
4V7P|1|AA|U|229
4V7P|1|AA|G|230

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20