IL_4V7P_019

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1291

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V7P|1|AA|G|409
4V7P|1|AA|G|410
4V7P|1|AA|A|411
4V7P|1|AA|A|412
4V7P|1|AA|G|413
4V7P|1|AA|A|414
4V7P|1|AA|A|415
4V7P|1|AA|G|416
*
4V7P|1|AA|U|427
4V7P|1|AA|G|428
4V7P|1|AA|U|429
4V7P|1|AA|A|430
4V7P|1|AA|A|431
4V7P|1|AA|A|432
4V7P|1|AA|C|433

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AD

30S ribosomal protein S4