3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_019 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1291
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4V7P|1|AA|G|409
4V7P|1|AA|G|410
4V7P|1|AA|A|411
4V7P|1|AA|A|412
4V7P|1|AA|G|413
4V7P|1|AA|A|414
4V7P|1|AA|A|415
4V7P|1|AA|G|416
*
4V7P|1|AA|U|427
4V7P|1|AA|G|428
4V7P|1|AA|U|429
4V7P|1|AA|A|430
4V7P|1|AA|A|431
4V7P|1|AA|A|432
4V7P|1|AA|C|433

Current chains

Chain AA
16S rRNA (1504-MER)

Nearby chains

Chain AD
30S ribosomal protein S4

Coloring options:


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