IL_4V7P_035

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_035 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0883

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V7P|1|AA|C|779
4V7P|1|AA|A|780
4V7P|1|AA|A|781
4V7P|1|AA|A|782
4V7P|1|AA|C|783
*
4V7P|1|AA|G|799
4V7P|1|AA|G|800
4V7P|1|AA|U|801
4V7P|1|AA|A|802
4V7P|1|AA|G|803

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA