IL_4V7P_038

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4V7P|1|AA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_038 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1393

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V7P|1|AA|G|925
4V7P|1|AA|G|926
4V7P|1|AA|G|927
*
4V7P|1|AA|U|1390
4V7P|1|AA|U|1391

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AX

messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')