IL_4V7P_048

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_048 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.1768

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V7P|1|AA|G|1127
4V7P|1|AA|C|1128
*
4V7P|1|AA|G|1143
4V7P|1|AA|G|1144
4V7P|1|AA|C|1145

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AI

30S ribosomal protein S9