IL_4V7P_094

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_094 not in the Motif Atlas

Homologous match to IL_7RQB_026

Geometric discrepancy: 0.2191

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V7P|1|BA|C|846
4V7P|1|BA|U|847
4V7P|1|BA|G|848
4V7P|1|BA|A|849
4V7P|1|BA|C|850
*
4V7P|1|BA|G|928
4V7P|1|BA|G|929
4V7P|1|BA|U|930
4V7P|1|BA|G|931

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L30