IL_4V7P_114

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4V7P|1|BA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_114 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.2783

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V7P|1|BA|C|1202
4V7P|1|BA|G|1203
4V7P|1|BA|A|1204
4V7P|1|BA|U|1205
4V7P|1|BA|G|1206
*
4V7P|1|BA|U|1240
4V7P|1|BA|A|1241
4V7P|1|BA|A|1242
4V7P|1|BA|G|1243

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15