IL_4V7P_165

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V7P|1|BA|A|2572, 4V7P|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_165 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.1037

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V7P|1|BA|C|2512
4V7P|1|BA|G|2513
*
4V7P|1|BA|C|2571
4V7P|1|BA|A|2572
4V7P|1|BA|C|2573
4V7P|1|BA|G|2574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Peptide chain release factor 1

Chain BD

50S ribosomal protein L3