IL_4V7P_188

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V7P|1|CA|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_188 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1087

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V7P|1|CA|G|81
4V7P|1|CA|G|82
4V7P|1|CA|G|83
4V7P|1|CA|A|84
4V7P|1|CA|G|85
*
4V7P|1|CA|C|97
4V7P|1|CA|G|98
4V7P|1|CA|U|99
4V7P|1|CA|G|101
4V7P|1|CA|G|102
4V7P|1|CA|A|103
4V7P|1|CA|U|104
4V7P|1|CA|C|105

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L24

Chain CY

50S ribosomal protein L29